Reference API

neuromaps_mouse.datasets - Dataset fetchers

Functions to fetch and load datasets.

Functions to show all available annotations

neuromaps_mouse.datasets.available_annotations([...])

Functions to fetch and describe the annotations

neuromaps_mouse.datasets.fetch_annotation(...)

Functions to fetch the atlases

neuromaps_mouse.datasets.fetch_allenccfv3([...])
neuromaps_mouse.datasets.fetch_all_atlases()

Support functions

neuromaps_mouse.datasets.get_data_dir([data_dir])

neuromaps_mouse.images - Image and surface handling

Functions for loading and remapping data.

Functions to load the images and surfaces

neuromaps_mouse.images.load_region_data(...)
neuromaps_mouse.images.load_image_data()

neuromaps_mouse.plotting - Plotting functions

Functions for plotting mouse brains.

neuromaps_mouse.plotting.plot_allenccfv3_ortho(...)
neuromaps_mouse.plotting.plot_allenccfv3_ortho_asym(...)
neuromaps_mouse.plotting.plot_allenccfv3_lightbox(...)
neuromaps_mouse.plotting.plot_allenccfv3_3d()

neuromaps_mouse.resampling - Resampling workflows

Functions for resampling and aligning structures.

neuromaps_mouse.resampling.query_structure_graph_allenccfv3(data)
neuromaps_mouse.resampling.get_feature_allenccfv3(data)
neuromaps_mouse.resampling.align_structures_allenccfv3(...)

neuromaps_mouse.stats - Statistical functions

Statistical functions.

neuromaps_mouse.stats.correlation()

neuromaps_mouse.transforms - Transformations between spaces

neuromaps_mouse.transforms.allenccfv3_to_allenccfv3()