Reference API

`neuromaps_mouse.datasets` - Dataset fetchers

Functions to fetch and load datasets.

Functions to show all available annotations

available_annotations([source, desc, space, ...])

List available annotations with optional filtering.

Functions to fetch and describe the annotations

fetch_annotation(annotations[, data_dir, ...])

Download and cache annotation files.

Functions to fetch the atlases

`fetch_allenccfv3`([which, return_single, ...])
`fetch_all_atlases`()

Support functions

Get the data directory.

Functions for loading and remapping data.

Functions to load the images and surfaces

`load_region_data`(annotation[, ...])
`load_image_data`()

Functions for plotting mouse brains.

`plot_allenccfv3_ortho`(regions, values[, ...])	Plot Allen CCFv3 brain regions in three orthogonal views.
`plot_allenccfv3_ortho_asym`(regions_lh, ...)	Plot Allen CCFv3 brain regions with separate left/right hemisphere data.
`plot_allenccfv3_lightbox`(regions, values[, ...])	Create a lightbox display of Allen CCFv3 brain regions across multiple slices.
`plot_allenccfv3_3d`()

Functions for resampling and aligning structures.

`query_structure_graph_allenccfv3`(data[, ...])
`get_feature_allenccfv3`(data[, in_col, ...])
`align_structures_allenccfv3`(acronyms_fixed, ...)
`match_structures_fuzzy_allenccfv3`()
`visualize_structure_alignment_allenccfv3`(...)

Statistical functions.