List of Maps
This is a complete list of maps available in the neuromaps_mouse package.
synaptome (zhu2018)
Full description
Architecture of the Mouse Brain Synaptome
zhu2018-typedensity-allenccfv3-region
Description: Synaptic type density
Format: tabular
How to use
# get annotation
fetch_annotation(('zhu2018', 'typedensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/zhu2018
# file name
# source-zhu2018_desc-typedensity_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-zhu2018_regionmapping.csv
References
structural connectome (oh2014)
Full description
A mesoscale connectome of the mouse brain
oh2014-wipsi-allenccfv3-region
Description: Weighted ipsilateral strength index
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'wipsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-wipsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
oh2014-pvalipsi-allenccfv3-region
Description: P values for wipsi
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'pvalipsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-pvalipsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
oh2014-wcontra-allenccfv3-region
Description: Weighted contralateral strength index
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'wcontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-wcontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
oh2014-pvalcontra-allenccfv3-region
Description: P values for wcontra
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'pvalcontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-pvalcontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
oh2014-distipsi-allenccfv3-region
Description: Distance (mm) for ipsilateral projections
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'distipsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-distipsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
oh2014-distcontra-allenccfv3-region
Description: Distance (mm) for contralateral projections
Format: matrix
How to use
# get annotation
fetch_annotation(('oh2014', 'distcontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/oh2014
# file name
# source-oh2014_desc-distcontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-oh2014_regionmapping.csv
References
cell type density (ero2018)
Full description
A Cell Atlas for the Mouse Brain
ero2018-celldensity-allenccfv3-region
Description: Density of cell types
Format: tabular
How to use
# get annotation
fetch_annotation(('ero2018', 'celldensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ero2018
# file name
# source-ero2018_desc-celldensity_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ero2018_regionmapping.csv
References
Allen Mouse Brain Atlas (lein2006amba)
Full description
Allen Mouse Brain Atlas
lein2006amba-sagittalenergy-allenccfv3-region
Description: Expression energy of sagittal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'sagittalenergy', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-sagittalenergy_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
lein2006amba-coronalenergy-allenccfv3-region
Description: Expression energy of coronal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'coronalenergy', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-coronalenergy_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
lein2006amba-sagittaldensity-allenccfv3-region
Description: Expression density of sagittal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'sagittaldensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-sagittaldensity_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
lein2006amba-coronaldensity-allenccfv3-region
Description: Expression density of coronal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'coronaldensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-coronaldensity_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
lein2006amba-sagittalintensity-allenccfv3-region
Description: Expression intensity of sagittal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'sagittalintensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-sagittalintensity_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
lein2006amba-coronalintensity-allenccfv3-region
Description: Expression intensity of coronal slices
Format: tabular
How to use
# get annotation
fetch_annotation(('lein2006amba', 'coronalintensity', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/lein2006amba
# file name
# source-lein2006amba_desc-coronalintensity_space-allenccfv3_res-region_tabular.csv.gz
# region mapping file
# source-lein2006amba_regionmapping.csv
References
ABC Atlas (MERFISH-C57BL6J-638850) (yao2023abca)
Full description
Mouse whole-brain transcriptomic cell type atlas (Hongkui Zeng)
yao2023abca-divimean-allenccfv3-region
Description: Average regional gene expressions at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'divimean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-divimean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-strumean-allenccfv3-region
Description: Average regional gene expressions at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'strumean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-strumean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-subsmean-allenccfv3-region
Description: Average regional gene expressions at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'subsmean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-subsmean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
yao2023abca-impdivimean-allenccfv3-region
Description: Average imputed regional gene expressions at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'impdivimean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-impdivimean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-impstrumean-allenccfv3-region
Description: Average imputed regional gene expressions at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'impstrumean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-impstrumean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-impsubsmean-allenccfv3-region
Description: Average imputed regional gene expressions at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'impsubsmean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-impsubsmean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
yao2023abca-divictclass-allenccfv3-region
Description: Cell type (class) at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'divictclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-divictclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-structclass-allenccfv3-region
Description: Cell type (class) at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'structclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-structclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-subsctclass-allenccfv3-region
Description: Cell type (class) at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'subsctclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-subsctclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
yao2023abca-divictsubclass-allenccfv3-region
Description: Cell type (subclass) at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'divictsubclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-divictsubclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-structsubclass-allenccfv3-region
Description: Cell type (subclass) at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'structsubclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-structsubclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-subsctsubclass-allenccfv3-region
Description: Cell type (subclass) at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'subsctsubclass', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-subsctsubclass_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
yao2023abca-divictsupertype-allenccfv3-region
Description: Cell type (supertype) at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'divictsupertype', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-divictsupertype_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-structsupertype-allenccfv3-region
Description: Cell type (supertype) at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'structsupertype', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-structsupertype_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-subsctsupertype-allenccfv3-region
Description: Cell type (supertype) at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'subsctsupertype', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-subsctsupertype_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
yao2023abca-divictcluster-allenccfv3-region
Description: Cell type (cluster) at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'divictcluster', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-divictcluster_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_division_regionmapping.csv
yao2023abca-structcluster-allenccfv3-region
Description: Cell type (cluster) at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'structcluster', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-structcluster_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_structure_regionmapping.csv
yao2023abca-subsctcluster-allenccfv3-region
Description: Cell type (cluster) at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('yao2023abca', 'subsctcluster', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/yao2023abca
# file name
# source-yao2023abca_desc-subsctcluster_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-yao2023abca_substructure_regionmapping.csv
References
ABC Atlas (Zhuang-ABCA) (zhang2023abca)
Full description
A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)
zhang2023abca-divimean-allenccfv3-region
Description: Average regional gene expressions at the division level
Format: tabular
How to use
# get annotation
fetch_annotation(('zhang2023abca', 'divimean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/zhang2023abca
# file name
# source-zhang2023abca_desc-divimean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-zhang2023abca_division_regionmapping.csv
zhang2023abca-strumean-allenccfv3-region
Description: Average regional gene expressions at the structure level
Format: tabular
How to use
# get annotation
fetch_annotation(('zhang2023abca', 'strumean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/zhang2023abca
# file name
# source-zhang2023abca_desc-strumean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-zhang2023abca_structure_regionmapping.csv
zhang2023abca-subsmean-allenccfv3-region
Description: Average regional gene expressions at the substructure level
Format: tabular
How to use
# get annotation
fetch_annotation(('zhang2023abca', 'subsmean', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/zhang2023abca
# file name
# source-zhang2023abca_desc-subsmean_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-zhang2023abca_substructure_regionmapping.csv
References
hi-res connectome (knox2018)
Full description
High-resolution data-driven model of the mouse connectome
knox2018-conndencontra-allenccfv3-region
Description: Connection density (contralateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'conndencontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-conndencontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-conndenipsi-allenccfv3-region
Description: Connection density (ipsilateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'conndenipsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-conndenipsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-connstrcontra-allenccfv3-region
Description: Connection strength (contralateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'connstrcontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-connstrcontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-connstripsi-allenccfv3-region
Description: Connection strength (ipsilateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'connstripsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-connstripsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-normconndencontra-allenccfv3-region
Description: Normalized connection density (contralateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'normconndencontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-normconndencontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-normconndenipsi-allenccfv3-region
Description: Normalized connection density (ipsilateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'normconndenipsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-normconndenipsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-normconnstrcontra-allenccfv3-region
Description: Normalized connection strength (contralateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'normconnstrcontra', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-normconnstrcontra_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
knox2018-normconnstripsi-allenccfv3-region
Description: Normalized connection strength (ipsilateral)
Format: matrix
How to use
# get annotation
fetch_annotation(('knox2018', 'normconnstripsi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/knox2018
# file name
# source-knox2018_desc-normconnstripsi_space-allenccfv3_res-region_matrix.csv
# region mapping file
# source-knox2018_regionmapping.csv
References
aboharb2025 (aboharb2025)
Full description
aboharb2025-5meo-allenccfv3-region
Description: 5-MeO
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', '5meo', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-5meo_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-6fdet-allenccfv3-region
Description: 6-F-DET
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', '6fdet', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-6fdet_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-assri-allenccfv3-region
Description: ASSRI
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'assri', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-assri_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-cssri-allenccfv3-region
Description: CSSRI
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'cssri', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-cssri_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-ket-allenccfv3-region
Description: Ketamine
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'ket', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-ket_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-mdma-allenccfv3-region
Description: MDMA
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'mdma', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-mdma_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-psi-allenccfv3-region
Description: Psilocybin
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'psi', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-psi_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
aboharb2025-sal-allenccfv3-region
Description: Saline
Format: tabular
How to use
# get annotation
fetch_annotation(('aboharb2025', 'sal', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/aboharb2025
# file name
# source-aboharb2025_desc-sal_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-aboharb2025_regionmapping.csv
References
ibl2025 (ibl2025)
Full description
ibl2025-behtask-allenccfv3-region
Description: Behavioral task
Format: tabular
How to use
# get annotation
fetch_annotation(('ibl2025', 'behtask', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ibl2025
# file name
# source-ibl2025_desc-behtask_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ibl2025_regionmapping.csv
ibl2025-ephys-allenccfv3-region
Description: Electrophysiology
Format: tabular
How to use
# get annotation
fetch_annotation(('ibl2025', 'ephys', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ibl2025
# file name
# source-ibl2025_desc-ephys_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ibl2025_regionmapping.csv
References
ji2021 (ji2021)
Full description
ji2021-ji2021-allenccfv3-region
Description: Ji 2021
Format: tabular
How to use
# get annotation
fetch_annotation(('ji2021', 'ji2021', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ji2021
# file name
# source-ji2021_desc-ji2021_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ji2021_regionmapping.csv
ji2021-kirst2020-allenccfv3-region
Description: Kirst 2020
Format: tabular
How to use
# get annotation
fetch_annotation(('ji2021', 'kirst2020', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ji2021
# file name
# source-ji2021_desc-kirst2020_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ji2021_regionmapping.csv
ji2021-todorov2020-allenccfv3-region
Description: Todorov 2020
Format: tabular
How to use
# get annotation
fetch_annotation(('ji2021', 'todorov2020', 'allenccfv3', 'region'))
# file location
# $MOUSEMAPS_DATA/ji2021
# file name
# source-ji2021_desc-todorov2020_space-allenccfv3_res-region_tabular.csv
# region mapping file
# source-ji2021_regionmapping.csv
References