User guide

neuromaps aims to provide a set of reproducible tools for working with and analyzing brain maps (or “annotations”).

This user guide steps through the basics of fetching brain atlases and annotations, transforming data to different spaces, and assessing relationships between brain maps using spatial null models. If you still have questions after going through this guide you can refer to the Reference API or ask a question on GitHub.

Table of Contents

• Coordinate systems
  • Supported coordinate systems
  • Accessing coordinate systems
• Brain maps and annotations
• Transformations between coordinate systems
  • Transforming from volumetric spaces
  • Transforming to/from surface spaces
  • Parcellations
• Comparing brain maps
  • Resampling brain maps
  • Statistical associations between maps
• Spatial nulls for significance testing
  • Nulls with surface-based data
  • Nulls for volumetric data
• Generating automated reports